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frame selector addgene plasmid  (Addgene inc)


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    Structured Review

    Addgene inc frame selector addgene plasmid
    Frame Selector Addgene Plasmid, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 164 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/frame+selector+addgene+plasmid/pSPgRNA+(Plasmid+%2347108)/pm40010349-207-187-188
    Average 96 stars, based on 164 article reviews
    frame selector addgene plasmid - by Bioz Stars, 2026-09
    96/100 stars

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    Related Articles

    Cell Recovery:

    Article Title: Interferon-responsive intestinal BEST4/CA7 + cells are targets of bacterial diarrheal toxins.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MYH-1485 MedChemExpress Cat# HY-B0795 Doxycycline Sigma-Aldrich Cat# D1822 Norepinephrine (NE) Sigma-Aldrich Cat# A9512 Cholera toxin (CTX) Sigma-Aldrich Cat# C8052 5-Bromo-2’-deoxyuridine (BrdU) Sigma-Aldrich Cat# B5002 TrypLE (TrypLETM Express Enzyme) Thermo Fisher Cat# 12605010 Opti-MEMTM Thermo Fisher Cat# 31985070 Corning Cell Recovery Solution Sigma-Aldrich Cat# CLS354253 4% Formaldehyde solution Sigma-Aldrich Cat# 1.00496 DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) Sigma-Aldrich Cat# 10236276001 Critical Commercial Assays iQTM SYBR Green Supermix BioRad Cat# 1708887 GoScriptTM reverse transcriptase kit Promega Cat# A5000 Miniprep DNA isolation kit Thermo Fisher Cat# K210003 Midiprep DNA isolation kit Thermo Fisher Cat# K210005 EdU Assay kit Thermo Fisher Cat# C10337 NucleoSpin RNA kit Macherey-Nagel Cat# 740955.50 Deposited Data Single-cell RNA-sequencing dataset (Human intestinal organoid cells in ‘‘differentiation medium’’ +/- IFN-g) This paper GEO: GSE242765 Experimental Models: Organoid lines Donor# P11N van de Wetering67 Diakonessen Hospital Utrecht Donor# 12339 He et al.13 The Netherlands Cancer Institute (NKI) Donor# 3466N He et al.13 NKI Donor# 4403N This paper NKI Oligonucleotides Sequences of qPCR primers, see Table S1 This paper N/A Sequences of sgRNAs, see Figures S1, S6, and S7 This paper N/A Recombinant DNA pSPgRNA Addgene plasmid# 47108 Frame-selector Addgene plasmid# 66940 mNeonGreen donor-targeting vector Addgene plasmid# 174092 P2A-tdTomato-BlastR donor-targeting vector This paper N/A pCMV_AncBE4max_P2A_GFP Addgene plasmid# 112100 p2T-SPIB-overexpression vector This paper N/A Software and Algorithms Graphpad PRISM 6 Graphpad software https://www.graphpad.com Adobe Photoshop (CC2017) Adobe https://www.adobe.com/products/photoshop.html Adobe Illustrator (CC2017) Adobe https://www.adobe.com/products/illustrator.html Biorender Biorender http://www.biorender.com IMARIS (v9.3) IMARIS https://imaris.oxinst.com Rstudio (v3.6.3) Rstudio https://www.rstudio.com Flow Jo (vX) Flow Jo https://www.flowjo.com DEseq2 R package Love et al. 68 http://www.bioconductor.org/ packages/release/bioc/html/DESeq2.html Seurat R package v3 Butler et al. 69 http://satijalab.org/seurat/ Cell Stem Cell 32, 1–15.e1–e5, April 3, 2025 e2

    SYBR Green Assay:

    Article Title: Interferon-responsive intestinal BEST4/CA7 + cells are targets of bacterial diarrheal toxins.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MYH-1485 MedChemExpress Cat# HY-B0795 Doxycycline Sigma-Aldrich Cat# D1822 Norepinephrine (NE) Sigma-Aldrich Cat# A9512 Cholera toxin (CTX) Sigma-Aldrich Cat# C8052 5-Bromo-2’-deoxyuridine (BrdU) Sigma-Aldrich Cat# B5002 TrypLE (TrypLETM Express Enzyme) Thermo Fisher Cat# 12605010 Opti-MEMTM Thermo Fisher Cat# 31985070 Corning Cell Recovery Solution Sigma-Aldrich Cat# CLS354253 4% Formaldehyde solution Sigma-Aldrich Cat# 1.00496 DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) Sigma-Aldrich Cat# 10236276001 Critical Commercial Assays iQTM SYBR Green Supermix BioRad Cat# 1708887 GoScriptTM reverse transcriptase kit Promega Cat# A5000 Miniprep DNA isolation kit Thermo Fisher Cat# K210003 Midiprep DNA isolation kit Thermo Fisher Cat# K210005 EdU Assay kit Thermo Fisher Cat# C10337 NucleoSpin RNA kit Macherey-Nagel Cat# 740955.50 Deposited Data Single-cell RNA-sequencing dataset (Human intestinal organoid cells in ‘‘differentiation medium’’ +/- IFN-g) This paper GEO: GSE242765 Experimental Models: Organoid lines Donor# P11N van de Wetering67 Diakonessen Hospital Utrecht Donor# 12339 He et al.13 The Netherlands Cancer Institute (NKI) Donor# 3466N He et al.13 NKI Donor# 4403N This paper NKI Oligonucleotides Sequences of qPCR primers, see Table S1 This paper N/A Sequences of sgRNAs, see Figures S1, S6, and S7 This paper N/A Recombinant DNA pSPgRNA Addgene plasmid# 47108 Frame-selector Addgene plasmid# 66940 mNeonGreen donor-targeting vector Addgene plasmid# 174092 P2A-tdTomato-BlastR donor-targeting vector This paper N/A pCMV_AncBE4max_P2A_GFP Addgene plasmid# 112100 p2T-SPIB-overexpression vector This paper N/A Software and Algorithms Graphpad PRISM 6 Graphpad software https://www.graphpad.com Adobe Photoshop (CC2017) Adobe https://www.adobe.com/products/photoshop.html Adobe Illustrator (CC2017) Adobe https://www.adobe.com/products/illustrator.html Biorender Biorender http://www.biorender.com IMARIS (v9.3) IMARIS https://imaris.oxinst.com Rstudio (v3.6.3) Rstudio https://www.rstudio.com Flow Jo (vX) Flow Jo https://www.flowjo.com DEseq2 R package Love et al. 68 http://www.bioconductor.org/ packages/release/bioc/html/DESeq2.html Seurat R package v3 Butler et al. 69 http://satijalab.org/seurat/ Cell Stem Cell 32, 1–15.e1–e5, April 3, 2025 e2

    Reverse Transcription:

    Article Title: Interferon-responsive intestinal BEST4/CA7 + cells are targets of bacterial diarrheal toxins.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MYH-1485 MedChemExpress Cat# HY-B0795 Doxycycline Sigma-Aldrich Cat# D1822 Norepinephrine (NE) Sigma-Aldrich Cat# A9512 Cholera toxin (CTX) Sigma-Aldrich Cat# C8052 5-Bromo-2’-deoxyuridine (BrdU) Sigma-Aldrich Cat# B5002 TrypLE (TrypLETM Express Enzyme) Thermo Fisher Cat# 12605010 Opti-MEMTM Thermo Fisher Cat# 31985070 Corning Cell Recovery Solution Sigma-Aldrich Cat# CLS354253 4% Formaldehyde solution Sigma-Aldrich Cat# 1.00496 DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) Sigma-Aldrich Cat# 10236276001 Critical Commercial Assays iQTM SYBR Green Supermix BioRad Cat# 1708887 GoScriptTM reverse transcriptase kit Promega Cat# A5000 Miniprep DNA isolation kit Thermo Fisher Cat# K210003 Midiprep DNA isolation kit Thermo Fisher Cat# K210005 EdU Assay kit Thermo Fisher Cat# C10337 NucleoSpin RNA kit Macherey-Nagel Cat# 740955.50 Deposited Data Single-cell RNA-sequencing dataset (Human intestinal organoid cells in ‘‘differentiation medium’’ +/- IFN-g) This paper GEO: GSE242765 Experimental Models: Organoid lines Donor# P11N van de Wetering67 Diakonessen Hospital Utrecht Donor# 12339 He et al.13 The Netherlands Cancer Institute (NKI) Donor# 3466N He et al.13 NKI Donor# 4403N This paper NKI Oligonucleotides Sequences of qPCR primers, see Table S1 This paper N/A Sequences of sgRNAs, see Figures S1, S6, and S7 This paper N/A Recombinant DNA pSPgRNA Addgene plasmid# 47108 Frame-selector Addgene plasmid# 66940 mNeonGreen donor-targeting vector Addgene plasmid# 174092 P2A-tdTomato-BlastR donor-targeting vector This paper N/A pCMV_AncBE4max_P2A_GFP Addgene plasmid# 112100 p2T-SPIB-overexpression vector This paper N/A Software and Algorithms Graphpad PRISM 6 Graphpad software https://www.graphpad.com Adobe Photoshop (CC2017) Adobe https://www.adobe.com/products/photoshop.html Adobe Illustrator (CC2017) Adobe https://www.adobe.com/products/illustrator.html Biorender Biorender http://www.biorender.com IMARIS (v9.3) IMARIS https://imaris.oxinst.com Rstudio (v3.6.3) Rstudio https://www.rstudio.com Flow Jo (vX) Flow Jo https://www.flowjo.com DEseq2 R package Love et al. 68 http://www.bioconductor.org/ packages/release/bioc/html/DESeq2.html Seurat R package v3 Butler et al. 69 http://satijalab.org/seurat/ Cell Stem Cell 32, 1–15.e1–e5, April 3, 2025 e2

    DNA Extraction:

    Article Title: Interferon-responsive intestinal BEST4/CA7 + cells are targets of bacterial diarrheal toxins.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MYH-1485 MedChemExpress Cat# HY-B0795 Doxycycline Sigma-Aldrich Cat# D1822 Norepinephrine (NE) Sigma-Aldrich Cat# A9512 Cholera toxin (CTX) Sigma-Aldrich Cat# C8052 5-Bromo-2’-deoxyuridine (BrdU) Sigma-Aldrich Cat# B5002 TrypLE (TrypLETM Express Enzyme) Thermo Fisher Cat# 12605010 Opti-MEMTM Thermo Fisher Cat# 31985070 Corning Cell Recovery Solution Sigma-Aldrich Cat# CLS354253 4% Formaldehyde solution Sigma-Aldrich Cat# 1.00496 DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) Sigma-Aldrich Cat# 10236276001 Critical Commercial Assays iQTM SYBR Green Supermix BioRad Cat# 1708887 GoScriptTM reverse transcriptase kit Promega Cat# A5000 Miniprep DNA isolation kit Thermo Fisher Cat# K210003 Midiprep DNA isolation kit Thermo Fisher Cat# K210005 EdU Assay kit Thermo Fisher Cat# C10337 NucleoSpin RNA kit Macherey-Nagel Cat# 740955.50 Deposited Data Single-cell RNA-sequencing dataset (Human intestinal organoid cells in ‘‘differentiation medium’’ +/- IFN-g) This paper GEO: GSE242765 Experimental Models: Organoid lines Donor# P11N van de Wetering67 Diakonessen Hospital Utrecht Donor# 12339 He et al.13 The Netherlands Cancer Institute (NKI) Donor# 3466N He et al.13 NKI Donor# 4403N This paper NKI Oligonucleotides Sequences of qPCR primers, see Table S1 This paper N/A Sequences of sgRNAs, see Figures S1, S6, and S7 This paper N/A Recombinant DNA pSPgRNA Addgene plasmid# 47108 Frame-selector Addgene plasmid# 66940 mNeonGreen donor-targeting vector Addgene plasmid# 174092 P2A-tdTomato-BlastR donor-targeting vector This paper N/A pCMV_AncBE4max_P2A_GFP Addgene plasmid# 112100 p2T-SPIB-overexpression vector This paper N/A Software and Algorithms Graphpad PRISM 6 Graphpad software https://www.graphpad.com Adobe Photoshop (CC2017) Adobe https://www.adobe.com/products/photoshop.html Adobe Illustrator (CC2017) Adobe https://www.adobe.com/products/illustrator.html Biorender Biorender http://www.biorender.com IMARIS (v9.3) IMARIS https://imaris.oxinst.com Rstudio (v3.6.3) Rstudio https://www.rstudio.com Flow Jo (vX) Flow Jo https://www.flowjo.com DEseq2 R package Love et al. 68 http://www.bioconductor.org/ packages/release/bioc/html/DESeq2.html Seurat R package v3 Butler et al. 69 http://satijalab.org/seurat/ Cell Stem Cell 32, 1–15.e1–e5, April 3, 2025 e2

    EdU Assay:

    Article Title: Interferon-responsive intestinal BEST4/CA7 + cells are targets of bacterial diarrheal toxins.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MYH-1485 MedChemExpress Cat# HY-B0795 Doxycycline Sigma-Aldrich Cat# D1822 Norepinephrine (NE) Sigma-Aldrich Cat# A9512 Cholera toxin (CTX) Sigma-Aldrich Cat# C8052 5-Bromo-2’-deoxyuridine (BrdU) Sigma-Aldrich Cat# B5002 TrypLE (TrypLETM Express Enzyme) Thermo Fisher Cat# 12605010 Opti-MEMTM Thermo Fisher Cat# 31985070 Corning Cell Recovery Solution Sigma-Aldrich Cat# CLS354253 4% Formaldehyde solution Sigma-Aldrich Cat# 1.00496 DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) Sigma-Aldrich Cat# 10236276001 Critical Commercial Assays iQTM SYBR Green Supermix BioRad Cat# 1708887 GoScriptTM reverse transcriptase kit Promega Cat# A5000 Miniprep DNA isolation kit Thermo Fisher Cat# K210003 Midiprep DNA isolation kit Thermo Fisher Cat# K210005 EdU Assay kit Thermo Fisher Cat# C10337 NucleoSpin RNA kit Macherey-Nagel Cat# 740955.50 Deposited Data Single-cell RNA-sequencing dataset (Human intestinal organoid cells in ‘‘differentiation medium’’ +/- IFN-g) This paper GEO: GSE242765 Experimental Models: Organoid lines Donor# P11N van de Wetering67 Diakonessen Hospital Utrecht Donor# 12339 He et al.13 The Netherlands Cancer Institute (NKI) Donor# 3466N He et al.13 NKI Donor# 4403N This paper NKI Oligonucleotides Sequences of qPCR primers, see Table S1 This paper N/A Sequences of sgRNAs, see Figures S1, S6, and S7 This paper N/A Recombinant DNA pSPgRNA Addgene plasmid# 47108 Frame-selector Addgene plasmid# 66940 mNeonGreen donor-targeting vector Addgene plasmid# 174092 P2A-tdTomato-BlastR donor-targeting vector This paper N/A pCMV_AncBE4max_P2A_GFP Addgene plasmid# 112100 p2T-SPIB-overexpression vector This paper N/A Software and Algorithms Graphpad PRISM 6 Graphpad software https://www.graphpad.com Adobe Photoshop (CC2017) Adobe https://www.adobe.com/products/photoshop.html Adobe Illustrator (CC2017) Adobe https://www.adobe.com/products/illustrator.html Biorender Biorender http://www.biorender.com IMARIS (v9.3) IMARIS https://imaris.oxinst.com Rstudio (v3.6.3) Rstudio https://www.rstudio.com Flow Jo (vX) Flow Jo https://www.flowjo.com DEseq2 R package Love et al. 68 http://www.bioconductor.org/ packages/release/bioc/html/DESeq2.html Seurat R package v3 Butler et al. 69 http://satijalab.org/seurat/ Cell Stem Cell 32, 1–15.e1–e5, April 3, 2025 e2

    Real-time Polymerase Chain Reaction:

    Article Title: Interferon-responsive intestinal BEST4/CA7 + cells are targets of bacterial diarrheal toxins.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MYH-1485 MedChemExpress Cat# HY-B0795 Doxycycline Sigma-Aldrich Cat# D1822 Norepinephrine (NE) Sigma-Aldrich Cat# A9512 Cholera toxin (CTX) Sigma-Aldrich Cat# C8052 5-Bromo-2’-deoxyuridine (BrdU) Sigma-Aldrich Cat# B5002 TrypLE (TrypLETM Express Enzyme) Thermo Fisher Cat# 12605010 Opti-MEMTM Thermo Fisher Cat# 31985070 Corning Cell Recovery Solution Sigma-Aldrich Cat# CLS354253 4% Formaldehyde solution Sigma-Aldrich Cat# 1.00496 DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) Sigma-Aldrich Cat# 10236276001 Critical Commercial Assays iQTM SYBR Green Supermix BioRad Cat# 1708887 GoScriptTM reverse transcriptase kit Promega Cat# A5000 Miniprep DNA isolation kit Thermo Fisher Cat# K210003 Midiprep DNA isolation kit Thermo Fisher Cat# K210005 EdU Assay kit Thermo Fisher Cat# C10337 NucleoSpin RNA kit Macherey-Nagel Cat# 740955.50 Deposited Data Single-cell RNA-sequencing dataset (Human intestinal organoid cells in ‘‘differentiation medium’’ +/- IFN-g) This paper GEO: GSE242765 Experimental Models: Organoid lines Donor# P11N van de Wetering67 Diakonessen Hospital Utrecht Donor# 12339 He et al.13 The Netherlands Cancer Institute (NKI) Donor# 3466N He et al.13 NKI Donor# 4403N This paper NKI Oligonucleotides Sequences of qPCR primers, see Table S1 This paper N/A Sequences of sgRNAs, see Figures S1, S6, and S7 This paper N/A Recombinant DNA pSPgRNA Addgene plasmid# 47108 Frame-selector Addgene plasmid# 66940 mNeonGreen donor-targeting vector Addgene plasmid# 174092 P2A-tdTomato-BlastR donor-targeting vector This paper N/A pCMV_AncBE4max_P2A_GFP Addgene plasmid# 112100 p2T-SPIB-overexpression vector This paper N/A Software and Algorithms Graphpad PRISM 6 Graphpad software https://www.graphpad.com Adobe Photoshop (CC2017) Adobe https://www.adobe.com/products/photoshop.html Adobe Illustrator (CC2017) Adobe https://www.adobe.com/products/illustrator.html Biorender Biorender http://www.biorender.com IMARIS (v9.3) IMARIS https://imaris.oxinst.com Rstudio (v3.6.3) Rstudio https://www.rstudio.com Flow Jo (vX) Flow Jo https://www.flowjo.com DEseq2 R package Love et al. 68 http://www.bioconductor.org/ packages/release/bioc/html/DESeq2.html Seurat R package v3 Butler et al. 69 http://satijalab.org/seurat/ Cell Stem Cell 32, 1–15.e1–e5, April 3, 2025 e2

    Recombinant:

    Article Title: Interferon-responsive intestinal BEST4/CA7 + cells are targets of bacterial diarrheal toxins.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MYH-1485 MedChemExpress Cat# HY-B0795 Doxycycline Sigma-Aldrich Cat# D1822 Norepinephrine (NE) Sigma-Aldrich Cat# A9512 Cholera toxin (CTX) Sigma-Aldrich Cat# C8052 5-Bromo-2’-deoxyuridine (BrdU) Sigma-Aldrich Cat# B5002 TrypLE (TrypLETM Express Enzyme) Thermo Fisher Cat# 12605010 Opti-MEMTM Thermo Fisher Cat# 31985070 Corning Cell Recovery Solution Sigma-Aldrich Cat# CLS354253 4% Formaldehyde solution Sigma-Aldrich Cat# 1.00496 DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) Sigma-Aldrich Cat# 10236276001 Critical Commercial Assays iQTM SYBR Green Supermix BioRad Cat# 1708887 GoScriptTM reverse transcriptase kit Promega Cat# A5000 Miniprep DNA isolation kit Thermo Fisher Cat# K210003 Midiprep DNA isolation kit Thermo Fisher Cat# K210005 EdU Assay kit Thermo Fisher Cat# C10337 NucleoSpin RNA kit Macherey-Nagel Cat# 740955.50 Deposited Data Single-cell RNA-sequencing dataset (Human intestinal organoid cells in ‘‘differentiation medium’’ +/- IFN-g) This paper GEO: GSE242765 Experimental Models: Organoid lines Donor# P11N van de Wetering67 Diakonessen Hospital Utrecht Donor# 12339 He et al.13 The Netherlands Cancer Institute (NKI) Donor# 3466N He et al.13 NKI Donor# 4403N This paper NKI Oligonucleotides Sequences of qPCR primers, see Table S1 This paper N/A Sequences of sgRNAs, see Figures S1, S6, and S7 This paper N/A Recombinant DNA pSPgRNA Addgene plasmid# 47108 Frame-selector Addgene plasmid# 66940 mNeonGreen donor-targeting vector Addgene plasmid# 174092 P2A-tdTomato-BlastR donor-targeting vector This paper N/A pCMV_AncBE4max_P2A_GFP Addgene plasmid# 112100 p2T-SPIB-overexpression vector This paper N/A Software and Algorithms Graphpad PRISM 6 Graphpad software https://www.graphpad.com Adobe Photoshop (CC2017) Adobe https://www.adobe.com/products/photoshop.html Adobe Illustrator (CC2017) Adobe https://www.adobe.com/products/illustrator.html Biorender Biorender http://www.biorender.com IMARIS (v9.3) IMARIS https://imaris.oxinst.com Rstudio (v3.6.3) Rstudio https://www.rstudio.com Flow Jo (vX) Flow Jo https://www.flowjo.com DEseq2 R package Love et al. 68 http://www.bioconductor.org/ packages/release/bioc/html/DESeq2.html Seurat R package v3 Butler et al. 69 http://satijalab.org/seurat/ Cell Stem Cell 32, 1–15.e1–e5, April 3, 2025 e2

    Plasmid Preparation:

    Article Title: Interferon-responsive intestinal BEST4/CA7 + cells are targets of bacterial diarrheal toxins.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MYH-1485 MedChemExpress Cat# HY-B0795 Doxycycline Sigma-Aldrich Cat# D1822 Norepinephrine (NE) Sigma-Aldrich Cat# A9512 Cholera toxin (CTX) Sigma-Aldrich Cat# C8052 5-Bromo-2’-deoxyuridine (BrdU) Sigma-Aldrich Cat# B5002 TrypLE (TrypLETM Express Enzyme) Thermo Fisher Cat# 12605010 Opti-MEMTM Thermo Fisher Cat# 31985070 Corning Cell Recovery Solution Sigma-Aldrich Cat# CLS354253 4% Formaldehyde solution Sigma-Aldrich Cat# 1.00496 DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) Sigma-Aldrich Cat# 10236276001 Critical Commercial Assays iQTM SYBR Green Supermix BioRad Cat# 1708887 GoScriptTM reverse transcriptase kit Promega Cat# A5000 Miniprep DNA isolation kit Thermo Fisher Cat# K210003 Midiprep DNA isolation kit Thermo Fisher Cat# K210005 EdU Assay kit Thermo Fisher Cat# C10337 NucleoSpin RNA kit Macherey-Nagel Cat# 740955.50 Deposited Data Single-cell RNA-sequencing dataset (Human intestinal organoid cells in ‘‘differentiation medium’’ +/- IFN-g) This paper GEO: GSE242765 Experimental Models: Organoid lines Donor# P11N van de Wetering67 Diakonessen Hospital Utrecht Donor# 12339 He et al.13 The Netherlands Cancer Institute (NKI) Donor# 3466N He et al.13 NKI Donor# 4403N This paper NKI Oligonucleotides Sequences of qPCR primers, see Table S1 This paper N/A Sequences of sgRNAs, see Figures S1, S6, and S7 This paper N/A Recombinant DNA pSPgRNA Addgene plasmid# 47108 Frame-selector Addgene plasmid# 66940 mNeonGreen donor-targeting vector Addgene plasmid# 174092 P2A-tdTomato-BlastR donor-targeting vector This paper N/A pCMV_AncBE4max_P2A_GFP Addgene plasmid# 112100 p2T-SPIB-overexpression vector This paper N/A Software and Algorithms Graphpad PRISM 6 Graphpad software https://www.graphpad.com Adobe Photoshop (CC2017) Adobe https://www.adobe.com/products/photoshop.html Adobe Illustrator (CC2017) Adobe https://www.adobe.com/products/illustrator.html Biorender Biorender http://www.biorender.com IMARIS (v9.3) IMARIS https://imaris.oxinst.com Rstudio (v3.6.3) Rstudio https://www.rstudio.com Flow Jo (vX) Flow Jo https://www.flowjo.com DEseq2 R package Love et al. 68 http://www.bioconductor.org/ packages/release/bioc/html/DESeq2.html Seurat R package v3 Butler et al. 69 http://satijalab.org/seurat/ Cell Stem Cell 32, 1–15.e1–e5, April 3, 2025 e2

    Software:

    Article Title: Interferon-responsive intestinal BEST4/CA7 + cells are targets of bacterial diarrheal toxins.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MYH-1485 MedChemExpress Cat# HY-B0795 Doxycycline Sigma-Aldrich Cat# D1822 Norepinephrine (NE) Sigma-Aldrich Cat# A9512 Cholera toxin (CTX) Sigma-Aldrich Cat# C8052 5-Bromo-2’-deoxyuridine (BrdU) Sigma-Aldrich Cat# B5002 TrypLE (TrypLETM Express Enzyme) Thermo Fisher Cat# 12605010 Opti-MEMTM Thermo Fisher Cat# 31985070 Corning Cell Recovery Solution Sigma-Aldrich Cat# CLS354253 4% Formaldehyde solution Sigma-Aldrich Cat# 1.00496 DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) Sigma-Aldrich Cat# 10236276001 Critical Commercial Assays iQTM SYBR Green Supermix BioRad Cat# 1708887 GoScriptTM reverse transcriptase kit Promega Cat# A5000 Miniprep DNA isolation kit Thermo Fisher Cat# K210003 Midiprep DNA isolation kit Thermo Fisher Cat# K210005 EdU Assay kit Thermo Fisher Cat# C10337 NucleoSpin RNA kit Macherey-Nagel Cat# 740955.50 Deposited Data Single-cell RNA-sequencing dataset (Human intestinal organoid cells in ‘‘differentiation medium’’ +/- IFN-g) This paper GEO: GSE242765 Experimental Models: Organoid lines Donor# P11N van de Wetering67 Diakonessen Hospital Utrecht Donor# 12339 He et al.13 The Netherlands Cancer Institute (NKI) Donor# 3466N He et al.13 NKI Donor# 4403N This paper NKI Oligonucleotides Sequences of qPCR primers, see Table S1 This paper N/A Sequences of sgRNAs, see Figures S1, S6, and S7 This paper N/A Recombinant DNA pSPgRNA Addgene plasmid# 47108 Frame-selector Addgene plasmid# 66940 mNeonGreen donor-targeting vector Addgene plasmid# 174092 P2A-tdTomato-BlastR donor-targeting vector This paper N/A pCMV_AncBE4max_P2A_GFP Addgene plasmid# 112100 p2T-SPIB-overexpression vector This paper N/A Software and Algorithms Graphpad PRISM 6 Graphpad software https://www.graphpad.com Adobe Photoshop (CC2017) Adobe https://www.adobe.com/products/photoshop.html Adobe Illustrator (CC2017) Adobe https://www.adobe.com/products/illustrator.html Biorender Biorender http://www.biorender.com IMARIS (v9.3) IMARIS https://imaris.oxinst.com Rstudio (v3.6.3) Rstudio https://www.rstudio.com Flow Jo (vX) Flow Jo https://www.flowjo.com DEseq2 R package Love et al. 68 http://www.bioconductor.org/ packages/release/bioc/html/DESeq2.html Seurat R package v3 Butler et al. 69 http://satijalab.org/seurat/ Cell Stem Cell 32, 1–15.e1–e5, April 3, 2025 e2



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